---
title: 'Scientist, Applied Cell Line Development & Customer Programs at Prolific Machines'
canonical: 'https://feeny.ai/job/scientist-applied-cell-line-development-customer-programs-prolific-machines-69532hah6f9d'
type: 'job'
last_seen: '2026-11-09'
---

# Scientist, Applied Cell Line Development & Customer Programs at Prolific Machines

- **Company:** Prolific Machines
- **Location:** Emeryville, CA
- **Compensation:** $125k–$185k
- **Employment:** full-time
- **Work type:** onsite
- **Posted:** 2026-11-07
- **Last confirmed live:** 2026-11-09
- **Apply:** https://jobs.lever.co/prolific-machines/89e06f0f-623e-412d-8778-d675995ae28b

## Job description

Prolific Machines is ushering in a new era of biotechnology with light. Our first-of-its-kind optogenetic platform delivers unprecedented control, precisely guiding cellular behavior when and where it matters most. Unlike existing tools used to control biology, our technology enables dynamic, tunable control over virtually any cellular function in any cell type. We're enabling partners to unlock robust efficiency, quality, and reproducibility advantages across the most complex pharmaceuticals and therapeutic proteins. Prolific is supported by leading investors, including Bill Gates’s Breakthrough Energy Ventures, Mayfield and SOSV.

We are seeking a skilled Research Associate to join our Cell Line Development team, contributing technically and scientifically to the advancement of multiple projects while bringing innovation and new perspectives to our workflows. This role will be based on-site in Emeryville, CA and will report to a Principal Scientist of the Cell Line Development department.

What you'll do:

- Lead technical project and experimental design: Work with program leads to translate customer objectives into experimental strategies, work plans, and decision points. Set technical direction with input and feedback from leadership, interpret results, and recommend next steps.
- Project and experimental execution: Independently and reliably execute experiments across stable cell line generation, protein production runs, analytical methods such as FACS and ddPCR and analyze experimental results.
- Work with and lead junior colleagues: Establish clear expectations, review experimental plans and data, and provide regular coaching and feedback to RAs on the team.
- Own project delivery: Coordinate with project managers to align activities, resources, dependencies, and timelines. Identify risks early, propose solutions, and escalate decisions with clear recommendations.
- Track, synthesize, and communicate project data: Establish and maintain clear data tracking, consolidate results across contributors, and develop slides for internal reviews and external partner updates. Distill findings into concise messages that connect results to project objectives, partner questions, risks, and recommended next steps. Contribute to customer discussions and presentations.
- Coordinate across functions: Work closely with R&D, platform development, bioprocessing, analytical, hardware, and data teams, in conjunction with project managers, to incorporate expertise and maintain alignment across project phases.
- Build repeatable delivery practices: Help develop workflows, templates, data packages, and handoff standards that translate emerging platform capabilities into consistent customer execution.

Some things about you:

- You enjoy taking responsibility for both the science and the coordination needed to deliver it.
- You bring structure to complex work and make priorities, responsibilities, and next steps clear to others you work with.
- You communicate concisely, tailor technical detail to your audience, and make recommendations grounded in data.
- You build productive relationships across disciplines and surface challenges early.
- You enjoy working with junior colleagues and improving how a growing team operates.
- You are excited about working in a fast-paced startup environment and are comfortable with evolving project scopes and shifting priorities

What you’ll need to succeed:

- Have a Ph.D. in Biology, Genetics, Genomics, Molecular Biology, Cell Biology or in a related field and 2-5 years of industry experience or 7+ years of relevant research experience to qualify for the Scientist II level. Candidates may be considered at the Scientist I, Scientist II, and Senior Scientist levels based on their experience, skillset, and demonstrated history of success in prior industry roles.
- Hands-on experience in mammalian cell line development or demonstrated experience across molecular cloning, mammalian cell engineering, and recombinant protein production workflows.
- Demonstrated experience leading technical projects in an industry setting, including experimental design, execution planning, data interpretation, and delivery against milestones.
- Experience working closely with or directly managing junior scientists or research associates in industry, including setting priorities, guiding execution and providing feedback.
- Demonstrated ability to organize and track project data and synthesize complex technical work into clear, concise presentations and written updates that support decisions.
- Strong organizational skills and experience coordinating work across functions, managing dependencies, and adapting plans as results and priorities evolve.

Additional valuable experience:

- Customer-facing scientific communication or external collaboration. Prior ownership of external communication is welcome but not required.
- CHO cell line development for biologics production, including stable expression, screening, and clone selection.
- Relevant cell engineering and characterization methods, such as transposon or targeted integration approaches, flow cytometry, fluorescence assays, and ddPCR.
- Developing standardized workflows or transferring methods and capabilities from R&D into routine project execution.

This position description likely contains skills you already have as well as skills you would learn in the role. These skills are not requirements, so if you think you would do a great job at this role then you should apply regardless of whether you fit the above criteria.

Benefits: Generous equity package in an early stage company, retirement plan with company contribution, flexible PTO with healthy time off minimums, company-covered medical, dental, and vision insurance, life and disability insurance, career coaching, mental health support, free team lunches everyday, great snacks, and companywide social events! Diversity: Prolific Machines values diverse perspectives, backgrounds, experiences, and ideas. We are committed to building an inclusive workplace where all employees can bring their authentic selves to work and have equal opportunities to succeed. Prolific Machines is proud to be an equal opportunity employer and does not discriminate on the basis of race, color, religion, creed, sex, gender identity or expression, sexual orientation, national origin, ancestry, age, disability, medical condition, genetic information, marital status, military or veteran status, or any other characteristic protected by applicable law. Location: The San Francisco Bay Area (Emeryville, CA)

## About Prolific Machines

## Company Overview
- **One-liner**: Prolific Machines uses optogenetics—controlling gene expression with light—to dramatically improve the productivity, quality, and control of biologics manufacturing.
- **Entity Type**: Private (Series A, later-stage)
- **Headquarters**: Emeryville, California, United States
- **Founded**: 2020
- **Founders**: Deniz Kent (CEO), Max Huisman (CTO), and others (including Declan Jones, CIO)

## Core Business
- **Primary industry**: Biotechnology (Industrial Biomanufacturing, Synthetic Biology)
- **Target customers**: Biotech and pharmaceutical companies developing biologics (including complex, difficult-to-express molecules), and CDMOs (Contract Development and Manufacturing Organizations).
- **Mission statement**: “To enable the next generation of biologic medicines by transforming how they are manufactured.” [prolific-machines.com](https://www.prolific-machines.com/about-us)

## Products & Services
- **enLIGHTtened BioManufacturing Platform**: An integrated system combining optogenetics-enabled cell lines, plug-and-play illumination hardware (compatible with standard bioreactors), AI-driven process optimization software, and advanced analytics. It offers dynamic, real-time control of protein expression to boost yields and product quality. [prolific-machines.com](https://www.prolific-machines.com/about-us)
- **Preclinical Cell Line & Process Development Services**: Early-stage development services offered to pharma and biotech partners.
- **Platform Licensing**: Options for partners to license the technology for in-house or CDMO-based manufacturing.

## Market Standing
- **Valuation/Market Cap**: Not publicly available.
- **Total Funding**: $109M across multiple rounds (including a $42M Series A in September 2022, a $12M Seed round, and several earlier Convertible Notes). [linkedin.com](https://linkedin.com/company/prolific-machines)
- **Estimated Annual Revenue**: ~$3.5M (based on third-party estimates). [linkedin.com](https://linkedin.com/company/prolific-machines)
- **Notable Investors**: Includes a syndicate of over 12 investors in the Series A round, and a strong base of early backers.
- **Growth Signals**: Year-over-year headcount growth of +4.8% (reaching 54 employees). The company has expanded its team across the US, Ghana, France, and Denmark. Job postings for roles in engineering, operations, and analytical sciences indicate ongoing scaling. [linkedin.com](https://linkedin.com/company/prolific-machines)

## Competitive Advantages
- **Secret sauce technology**: Prolific is the first company to industrialize optogenetics for biomanufacturing, bringing dynamic, real-time control of gene expression that is not possible with traditional engineering methods.
- **Plug-and-play integration**: The illumination system and cell lines are designed to fit into *existing* bioreactor infrastructure, lowering the barrier for adoption by CDMOs and pharma.
- **Full-stack solution**: Combines hardware, cell line engineering, AI/software for process optimization, and analytics—a rare integrated offering in the biologics manufacturing space.

## Strategic Focus
- **Productization and scaling**: Transitioning from a development-stage company to a commercial platform provider, with a focus on selling services and licenses to biotech and pharma partners.
- **Real-world manufacturing**: Emphasis on ensuring the technology works seamlessly in high-volume, regulated GMP environments.
- **Enabling complex biologics**: Targeting the most difficult-to-produce molecules (e.g., bispecific antibodies, fusion proteins) for which current manufacturing methods are bottlenecks.

## Why Work Here
- **High-impact mission**: Directly enabling the next generation of biologic medicines that are currently limited by manufacturing challenges.
- **Collaborative, transparent culture**: The company emphasizes “rigorously sharing, testing, and developing ideas as a group” and judging ideas on merit, not origin. [prolific-machines.com](https://www.prolific-machines.com/careers)
- **Strong total rewards**:
    - Competitive cash compensation and generous equity packages.
    - Spot performance bonuses and retirement plan with company contribution.
    - Flexible PTO with healthy minimums.
    - Company-covered medical, dental, and vision insurance.
    - Free team lunches every day and great snacks.
    - Career coaching and mental health support. [prolific-machines.com](https://www.prolific-machines.com/careers)
- **Work model**: Roles listed on the careers page are currently **on-site** in Emeryville, California. [jobs.lever.co](https://jobs.lever.co/prolific-machines)
- **Employee sentiment**: Strong ratings on LinkedIn (4.2/5 overall), with particularly high marks for Culture (5.0), Career (4.7), and Work-Life Balance (4.8). [linkedin.com](https://linkedin.com/company/prolific-machines)

## Sources
1. [prolific-machines.com - About Us](https://www.prolific-machines.com/about-us)
2. [prolific-machines.com - Careers](https://www.prolific-machines.com/careers)
3. [linkedin.com - Prolific Machines Company Profile](https://linkedin.com/company/prolific-machines)
4. [jobs.lever.co - Prolific Machines Open Roles](https://jobs.lever.co/prolific-machines)
5. [prolific-machines.com - Meet the Team](https://www.prolific-machines.com/team)

## Other roles at Prolific Machines

- [Research Associate, Applied Cell Line Development & Customer Programs](https://feeny.ai/job/research-associate-applied-cell-line-development-customer-programs-prolific-hv3h0hzbkh2e) — Emeryville, CA
- [Associate Technical Project Manager](https://feeny.ai/job/associate-technical-project-manager-prolific-machines-emeryville-c5z5xb0q9h0c) — Emeryville, CA
- [Senior Scientist, Analytical Operations](https://feeny.ai/job/senior-scientist-analytical-operations-prolific-machines-emeryville-d604hx6qcy98) — Emeryville, CA
- [Research Associate I, Analytical Chemistry](https://feeny.ai/job/research-associate-i-analytical-chemistry-prolific-machines-emeryville-267ahd2w88be) — Emeryville, CA
- [Senior Field Deployment Engineer](https://feeny.ai/job/senior-field-deployment-engineer-prolific-machines-emeryville-hykxqbgxyvbf) — Emeryville, CA
- [Research Associate, Cell Line Development Automation](https://feeny.ai/job/research-associate-cell-line-development-automation-prolific-machines-emeryville-jcpy1b904s01) — Emeryville, CA
- [Head Of/Director, Hardware Engineering](https://feeny.ai/job/head-of-director-hardware-engineering-prolific-machines-emeryville-znszv3h02y5j) — Emeryville, CA
- [Analytical Scientist I](https://feeny.ai/job/analytical-scientist-i-prolific-machines-emeryville-ftqf10325f5k) — Emeryville, CA
- [Optical Engineer](https://feeny.ai/job/optical-engineer-prolific-machines-emeryville-5gxs6p1z1xg3) — Emeryville, CA