---
title: 'Scientist - Ensemble Structural Informatics (CURRENTLY NOT ACCEPTING APPLICATIONS) at Astera Institute'
canonical: 'https://feeny.ai/job/scientist-ensemble-structural-informatics-currently-not-accepting-applications-mcq4graz314k'
type: 'job'
last_seen: '2026-10-13'
---

# Scientist - Ensemble Structural Informatics (CURRENTLY NOT ACCEPTING APPLICATIONS) at Astera Institute

- **Company:** Astera Institute
- **Location:** Emeryville, CA
- **Compensation:** $100k–$180k
- **Employment:** full-time
- **Work type:** onsite
- **Posted:** 2026-03-10
- **Last confirmed live:** 2026-10-13
- **Apply:** https://jobs.ashbyhq.com/astera/c68cd9fd-59fb-4d0f-bf56-4b7d1b2e1e90/application

**Skills:** Structural biology methods, Structural heterogeneity, Biomolecular systems dynamics, Data standards, Metadata frameworks, Scientific database development, PDB, EMDB, BMRB, Machine learning workflows, Model uncertainty quantification, Ensemble refinement methods, Data engineering principles

> The Scientist will lead the development of standards for dynamic structural biology data, focusing on validation metrics and forward models for X-ray crystallography and cryo-EM. This role involves architecting infrastructure for data deposition and search, building cross-modality validation metrics for ensemble mod...

## Job description

Position Summary Prism is seeking a Scientist to join a multidisciplinary team to help build the infrastructure needed to host and distribute dynamic structural biology data. Prism is a program within Radial, the basic life sciences division of the Astera Institute. We are making protein motion measurable, predictable, and actionable by building open infrastructure for studying protein dynamics directly from experimental data. Function emerges from the ensemble of conformations a protein adopts and how it moves between them, and we are rebuilding the structural biology stack around that premise: data collection, modeling, representation, and interpretation. We work at the interface of experimental structural biology (crystallography, cryo-EM), machine learning, computational biophysics, and open scientific tooling. Our team spans computational biologists, ML researchers, software engineers, and program staff, collaborating across Radial, Astera, and partner institutions. This role will lead the development of standards that empower the structural biology community to deposit, validate, search, and leverage dynamic structural information at scale. A core focus will be establishing validation metrics and forward models for X-ray crystallography, cryo-EM, and related techniques, providing rigorous frameworks to assess the quality of structural models, distinguish geometric accuracy from fit to experimental data, and ensure scientific trustworthiness across diverse methodologies. This includes developing cross-modality validation metrics with a particular emphasis on ensemble and multistate models, where understanding which experimental data to validate against (i.e. raw images versus processed maps) and how such evaluations should be standardized and scaled within a database setting are open and consequential challenges. The position involves architecting the foundational infrastructure alongside dedicated software engineers. Duties will also include building and socializing community standards to make dynamic structural biology data as accessible, reliable, and scientifically impactful as the Protein Data Bank has been for static structures. Your work will be central to evolving alongside algorithmic advances while upholding the highest standards of scientific rigor and reproducibility. This is a full-time position within Prism, in-person at Radial, a division of the Astera Institute.

## Key Responsibilities

- Oversee development of ensemble-aware validation frameworks that assess fit-to-data, physical realism, and uncertainty across diverse structural representations
- Identify and prioritize technical challenges, from data representation to validation frameworks
- Guide the creation of data deposition, search, and retrieval tools that allow users to interrogate and interpret structural heterogeneity at scale
- Help coordinate with stakeholders to ensure interoperability and adoption
- Work with software developers, data engineers, and user experience designers to translate scientific requirements into robust technical solutions

Required Skills and Qualifications

- Ph.D. in structural biology, biophysics, computational biology, or related field
- Demonstrated expertise in structural biology methods
- Deep understanding of structural heterogeneity and dynamics in biomolecular systems
- Experience with data standards, metadata frameworks, or scientific database development
- Strong collaborative skills and ability to build consensus across diverse scientific communities

## Preferred Skills and Experience

- Experience with PDB, EMDB, BMRB, or other structural biology databases
- Knowledge of validation methods for experimental and computational structural data
- Familiarity with machine learning workflows and ML-ready data formats
- Background in model uncertainty quantification or ensemble refinement methods
- Understanding of software development practices and data engineering principles
- Track record of working at the interface of methods development and infrastructure

## Compensation

The posted salary range is based on location in the Bay Area. The successful candidate will receive a competitive compensation package, commensurate with their experience and location.

- [Benefits summary](https://www.notion.so/Astera-Benefits-Summary-Residents-and-Temporary-Staff-30caa1d01f248091ab8be9eaed84f998)

## About Astera Institute

## Company Overview
- **One-liner**: Astera Institute is a nonprofit organization that funds and conducts high-impact scientific research and engineering projects focused on neuroscience, artificial general intelligence (AGI), and open science to accelerate positive futures for humanity.
- **Entity Type**: Private nonprofit (501(c)(3) private foundation)
- **Headquarters**: Berkeley, California, United States
- **Founded**: 2020
- **Founders**: Jed McCaleb (also co-founder of Stellar Development Foundation and founder of Vast)

## Core Business
- **Primary industries**: Research services, neuroscience, artificial intelligence, life sciences, grantmaking
- **Target customers**: Not applicable (nonprofit; serves the research community and the public through open science and foundational advances)
- **Mission / purpose**: Empower visionary, high-leverage science and technology projects with the capacity to create transformative progress for human civilization. Focus on areas like AGI, science, and climate that lack natural homes in the existing innovation ecosystem.

## Products & Services
Astera operates three main divisions (not commercial products):
- **Neuro & AGI**: Directed neuroscience and AI research effort to understand biological intelligence and engineer safe, successful general intelligence systems. [astera.org](https://astera.org/)
- **Radial**: Life sciences research division that funds and runs high-impact fundamental scientific challenges, testing new models for how science is conducted. [astera.org](https://astera.org/)
- **Foundation**: Centralized operational, financial support, and ecosystem-building for Neuro-AI, Science, and Strategic Investments. Also leads Residency and Fellowship programs. [astera.org](https://astera.org/)

## Market Standing
- **Valuation / Market Cap**: Not applicable (nonprofit)
- **Key Metrics**: 
  - **Total assets** (2023): $2,003,858,714 [causeiq.com](https://www.causeiq.com/organizations/astera-institute,845162617/)
  - **Total expenses** (2023): $27,504,754 [causeiq.com](https://www.causeiq.com/organizations/astera-institute,845162617/)
  - **Investment income and dividends** (2023): $58,598,494 [causeiq.com](https://www.causeiq.com/organizations/astera-institute,845162617/)
  - **Headcount**: 55 employees (+63.4% YoY) [linkedin.com](https://www.linkedin.com/company/astera-institute)
- **Notable Investors / Partners**: Funded primarily by founder Jed McCaleb (grants contributed $131M in 2022). Key leaders include Prachee Avasthi (Head of Open Science), Doris Tsao (Chief Scientist – Neuro), Seemay Chou (CEO – Radial), and Dileep George (Co-Founder, Neuro & AGI). [astera.org](https://astera.org/team/)
- **Growth Signals**: 
  - 63.4% employee growth year-over-year (55 people) [linkedin.com](https://www.linkedin.com/company/astera-institute)
  - 23 active job postings (up 1050% YoY) [linkedin.com](https://www.linkedin.com/company/astera-institute)
  - LinkedIn followers grew 128.9% yearly [linkedin.com](https://www.linkedin.com/company/astera-institute)
  - Presence in Netherlands and United Kingdom [linkedin.com](https://www.linkedin.com/company/astera-institute)

## Competitive Advantages
- **Unique model**: Nonprofit foundation that internally incubates and directly funds high-risk, high-leverage research across neuroscience, AI, and life sciences — without the pressure of commercial returns.
- **Top-tier leadership**: Led by accomplished scientists (e.g., Doris Tsao, Dileep George) and experienced operators from organizations like Stellar, Google, and Arcadia Science. [astera.org](https://astera.org/team/)
- **Open science focus**: Strong commitment to open access research and new models for scientific collaboration, attracting talent who value transparency and impact.
- **Substantial capital base**: Over $2B in assets provides long-term runway for ambitious, multi-year projects.

## Strategic Focus
- Deepen understanding of biological intelligence through large-scale neural circuit analysis and causal manipulation (Neuro & AGI). [astera.org](https://astera.org/)
- Continue incubation of radical science projects via Radial, particularly in aging, biotech, and platforms. [causeiq.com](https://www.causeiq.com/organizations/astera-institute,845162617/)
- Expand the Residency and Fellowship programs to attract diverse scientific and engineering talent. [astera.org](https://astera.org/)
- Scale operations and hiring: current job postings span roles from vivarium operations manager to research scientists in energy-based models and distributed simulation systems. [jobs.ashbyhq.com](https://jobs.ashbyhq.com/astera)

## Why Work Here
- **Mission-driven work**: Directly contribute to foundational research that could reshape humanity’s future with AGI and novel science.
- **Benefits**: Full-time W2 employees receive top-tier medical/dental/vision insurance, 403(b) retirement plans, long-term disability plan, health/dependent-care FSAs, and commuter pre-tax accounts. [astera.org](https://astera.org/careers/)
- **Culture**: Described as an equal opportunity employer committed to equity and inclusion, encouraging diverse applicants. Emphasis on open science, experimentation, and high-leverage impact. [astera.org](https://astera.org/careers/)
- **Work setup**: Headquarters in Berkeley, CA; also has staff in the Netherlands and UK. Specific remote/hybrid policy not disclosed but multiple job postings suggest flexible arrangements.
- **Team composition**: Highly technical and research-oriented (21 researchers, 10 technical staff, 6 medical). Staff previously from Google, Stanford, UCSF, Arcadia Science, Relay Therapeutics. [linkedin.com](https://www.linkedin.com/company/astera-institute)
- **Rapid growth**: 63% YoY headcount increase and 1050% growth in job postings signal an expanding organization with ample career opportunities.

## Sources
1. [astera.org](https://astera.org/) – Homepage and division descriptions
2. [astera.org](https://astera.org/team/) – Leadership team details
3. [astera.org](https://astera.org/careers/) – Benefits and culture
4. [linkedin.com](https://www.linkedin.com/company/astera-institute) – Company page with headcount, growth, job postings, and talent sources
5. [causeiq.com](https://www.causeiq.com/organizations/astera-institute,845162617/) – Financials (990-PF: revenues, expenses, assets, program areas)
6. [jobs.ashbyhq.com](https://jobs.ashbyhq.com/astera) – Active open positions list

## Other roles at Astera Institute

- [Administrative Assistant](https://feeny.ai/job/administrative-assistant-astera-institute-emeryville-0qk239d039tq) — Emeryville, CA
- [Founding Technical Recruiter](https://feeny.ai/job/founding-technical-recruiter-astera-institute-emeryville-1dqbvewa4hca) — Emeryville, CA
- [Open Science Policy and Operations Manager](https://feeny.ai/job/open-science-policy-and-operations-manager-astera-institute-emeryville-e9favr4btbyy) — Emeryville, CA
- [Probe Engineer](https://feeny.ai/job/probe-engineer-astera-institute-alameda-v8cj3qr564xq) — Alameda, CA
- [Scientific Writer, Life Science (Radial)](https://feeny.ai/job/scientific-writer-life-science-radial-astera-institute-emeryville-fs8456g7v3fx) — Emeryville, CA
- [Principal AI Scientist (Polytope Bio)](https://feeny.ai/job/principal-ai-scientist-polytope-bio-astera-institute-remote-5wqeq3z45wdk)
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- [Research Scientist/Engineer, Deep Brain Two Photon Imaging and Optogenetics](https://feeny.ai/job/research-scientist-engineer-deep-brain-two-photon-imaging-and-optogenetics-67dzysn3hyam) — Alameda, CA
- [Research Scientist, All-Optical Investigation of Rodent Cognition](https://feeny.ai/job/research-scientist-all-optical-investigation-of-rodent-cognition-astera-6mt4g8pwc4hn) — Alameda, CA
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