--- title: 'Senior Director, Medical Affairs Operations at Amylyx Pharmaceuticals' canonical: 'https://feeny.ai/job/senior-director-medical-affairs-operations-amylyx-pharmaceuticals-cambridge-xf60v8jdtd2e' type: 'job' last_seen: '2026-11-03' --- # Senior Director, Medical Affairs Operations at Amylyx Pharmaceuticals - **Company:** Amylyx Pharmaceuticals - **Location:** Cambridge, MA - **Compensation:** $281k–$316k - **Posted:** 2026-10-30 - **Last confirmed live:** 2026-11-03 - **Apply:** https://job-boards.greenhouse.io/amylyx/jobs/6236150004 ## Job description Amylyx has an audacious mission to usher in a new era for treating diseases with high unmet needs. Where others see challenges, we see opportunities that we pursue with urgency, rigorous science, and unwavering commitment to the communities we serve. We are a clinical-stage company currently focused on post-bariatric hypoglycemia (PBH), Wolfram syndrome, and amyotrophic lateral sclerosis (ALS). Our mission is powered by our people. Our core values – be audacious, be curious, be authentic, be engaged, and be accountable – creating a culture of caring. Amylyx has assembled an experienced team ready to take action because the communities we serve have no time to wait. If you share our passion and are determined to tackle some of medicine’s toughest problems, we encourage you to read the opportunity below and apply. The Opportunity The Senior Director of Medical Affairs Operations will provide strategic and operational leadership for the Medical Affairs organization. This individual will be responsible for building and scaling the medical affairs operational infrastructure, processes, systems, governance, vendor ecosystem, budgets, and performance metrics necessary to support a high-performing and compliant medical organization. Working closely with Medical Affairs leadership and cross-functional partners across Commercial, Regulatory Affairs, Clinical Development, Pharmacovigilance, Legal/Compliance, Market Access, and IT, the Senior Director will ensure operational launch readiness while establishing a foundation that can scale as the organization grows. The successful candidate will be a proactive leader with deep expertise in medical affairs operations, launch planning, project management, vendor oversight, and process optimization in a fast-paced biotechnology environment. ## Responsibilities - Medical Affairs Strategic Operations: Partner with Medical Affairs leadership to develop annual strategic plans, budgets, resource and operating models, leadership team meeting agendas and governance structures, and organizational priorities to support launch readiness and operational excellence and efficiency. - Launch Readiness and Execution: Ensure operational readiness for launch-related activities, including field medical effectiveness, medical information, publication and scientific communications, KOL engagement, and congress execution. - Vendor and Budget Management: Oversee Medical Affairs budgets, forecasting, accruals, and financial planning. Partner with Finance and Procurement to optimize vendor and spending strategies. Lead selection, contracting, governance, and performance management of Medical Affairs vendors and strategic partners. - Evidence Generation/Investigator-Initiated Research: Lead operational support for evidence-generation activities, including investigator-sponsored research, grants, collaborative research, and other applicable Medical Affairs studies. Establish governance, intake and review processes, contracting workflows, fair-market-value and budget coordination, milestone tracking, reporting, issue escalation, and closeout processes in partnership with relevant cross-functional stakeholders. - Systems, Technology, and Analytics: Develop Medical Affairs KPIs, dashboards, and reporting capabilities. Lead the selection, implementation, and optimization of Medical Affairs systems and technologies, including CRM platform, Medical Information systems, publication and scientific communication tools, and grant and investigator-initiated study systems and processes. - Compliance and Governance: Partner closely with Legal, Compliance, and Regulatory Affairs to establish appropriate review and governance processes. Develop and maintain documentation, SOPs, training programs, and operational controls. - Field Medical Operations: Partner with field medical leadership on organizational design, territory planning, stakeholder segmentation and prioritization, CRM utilization, operational processes, and field-effectiveness metrics. Develop and maintain a medical insights framework to capture, analyze, synthesize, communicate, and track the use of field and external stakeholder insights in Medical Affairs strategy, evidence generation, and launch planning. - Medical Operations Leadership and Team Building: Build and lead the Medical Affairs Operations function, including defining the organizational structure, capabilities, roles, responsibilities, and operating rhythms required to support growth. Recruit, develop, and retain team members as the function scales, and foster a culture of accountability, collaboration, continuous improvement, and high-quality execution. ## Requirements - Bachelor's degree in life sciences, healthcare, business, or related field. - 10+ years of biotechnology, pharmaceutical, or healthcare industry experience, including progressively responsible leadership in Medical Affairs Operations and demonstrated success building or scaling capabilities, leading complex cross-functional initiatives, and influencing senior stakeholders in a matrixed organization. - Demonstrated expertise in Medical Affairs operations, launch planning and execution, project and portfolio management, vendor management, budget management, medical compliance processes, medical systems and technologies, and sponsorships and grants systems and processes. - Strong understanding of Medical Affairs functions and their interdependencies, including Field Medical, Medical Information, Scientific Communications and Publications, Medical Education, Evidence Generation, Investigator-Sponsored Research, Grants, Congresses, KOL Engagement, and Medical Insights. - Strong understanding of U.S. requirements and industry standards applicable to Medical Affairs activities, scientific exchange, and Medical Information. - Experience supporting at least one successful U.S. product launch, with direct responsibility for one or more Medical Affairs launch workstreams and demonstrated ownership of cross-functional planning, execution, and readiness assessment. ## Preferred Qualifications - Advanced degree (MBA, MPH, PharmD, PhD, or equivalent) preferred. - Experience building operational capabilities within emerging biotech organizations preferred. Work Location and Conditions - At Amylyx, we proudly support remote work opportunities within the United States. However, due to business considerations related to health insurance coverage and state tax regulations, we are unable to hire employees who reside and/or work in certain states. Currently, we are not considering applicants from Alaska and Hawaii. - You will be expected to travel to our corporate location in Cambridge, MA several times a year and attend other company-related events as necessary and requested. - You must have access to work in setting which enables meeting all requirements of the role (including privacy, reliable internet access, phone, ability to video conference, etc.) at your remote location. ## Compensation The pay range posted below represents our good faith estimate of compensation for this role, based on market data and internal benchmarks. The final offer may vary depending on a candidate’s experience, skills, and qualifications, as well as considerations of internal equity. Estimated Pay Range $281,000—$316,000 USD To stay connected with us, follow Amylyx Pharmaceuticals on [LinkedIn](https://www.linkedin.com/company/amylyx). To return to our website please [click here](https://www.amylyx.com/). Amylyx Pharmaceuticals is an Equal Opportunity Employer that does not discriminate on the basis of actual or perceived race, color, creed, religion, national origin, ancestry, citizenship status, age, sex or gender (including pregnancy, childbirth, pregnancy-related conditions, and lactation), gender identity or expression (including transgender status), sexual orientation, marital status, military service and veteran status, physical or mental disability, genetic information, or any other characteristic protected by applicable federal, state, or local laws and ordinances. Amylyx’s management team is dedicated to this policy with respect to recruitment, hiring, placement, promotion, transfer, training, compensation, benefits, employee activities, access to facilities and programs, and general treatment during employment. Accommodations are available for candidates who require them in our selection process. If you need an accommodation, please let your Amylyx Talent Acquisition contact know. It is unlawful in Massachusetts to require or administer a lie detector test as a condition of employment or continued employment. An employer who violates this law shall be subject to criminal penalties and civil liability. ## About Amylyx Pharmaceuticals ## Company Overview - **One-liner**: Amylyx Pharmaceuticals is a clinical-stage pharmaceutical company focused on developing novel therapies for serious diseases with high unmet needs, including neurodegenerative and rare diseases. - **Entity Type**: Public (NASDAQ: AMLX) - **Headquarters**: Cambridge, Massachusetts, United States - **Founded**: 2013 - **Founders**: Josh Cohen and Justin Klee ## Core Business - Primary industry/industries: Biotechnology / Pharmaceuticals - Target customers: Patients, healthcare providers, and payers (B2B/B2C); primarily focused on rare and neurodegenerative diseases - Mission or purpose statement: To develop novel therapies for high unmet needs with urgency, rigorous science, and unwavering commitment to the communities they serve. ## Products & Services - **AMX0035 (RELYVRIO®/ALBRIOZA)**: An investigational combination therapy for Wolfram syndrome and previously approved for ALS (voluntarily withdrawn after Phase 3 PHOENIX trial did not meet primary endpoint). Still being studied in Wolfram syndrome. - **Avexitide**: A Phase 3-ready GLP-1 receptor antagonist with FDA Breakthrough Therapy designation for post-bariatric hypoglycemia (PBH) and congenital hyperinsulinism (HI). Dosing in Phase 3 LUCIDITY trial. - **AMX0114**: An investigational therapy for ALS, currently in Phase 1 LUMINA clinical trial, with FDA Fast Track designation. - **AMX0318**: A long-acting GLP-1 receptor antagonist in IND-enabling studies for PBH and other rare diseases, developed in collaboration with Gubra A/S. ## Market Standing - **Valuation/Market Cap**: Not publicly available from provided sources (public company; market cap fluctuates) - **Key Metric**: Completed IPO on NASDAQ in April 2025 (ticker: AMLX); annual revenue not disclosed (clinical-stage, no approved products currently marketed) - **Notable Investors/Partners**: Gubra A/S (research collaboration), Dr. Rudy Tanzi (Founding Chair of Scientific Advisory Board) - **Growth Signals**: Expanded pipeline with avexitide acquisition (July 2024); multiple FDA designations (Fast Track, Orphan Drug); first patients dosed in Phase 1 LUMINA (ALS) and Phase 3 LUCIDITY (PBH); ongoing IND-enabling studies for AMX0318. ## Competitive Advantages - Focus on high unmet needs with a rigorous, science-driven approach to drug development. - Strong pipeline diversification across multiple rare and neurodegenerative diseases. - Experienced team with collective expertise from therapeutic development through commercialization. - Deep engagement with patient communities and care providers to understand unmet needs. - Agile, hybrid-remote work environment that attracts and retains top talent. ## Strategic Focus - Advancing late-stage clinical trials (avexitide Phase 3, AMX0035 Phase 2 in Wolfram syndrome). - Expanding pipeline through business development and collaborations (e.g., Gubra). - Leveraging regulatory designations (Breakthrough Therapy, Fast Track, Orphan Drug) to accelerate development. - Continuing to build a culture of urgency, accountability, and innovation to serve patients with high unmet needs. ## Why Work Here - **Culture**: Values-driven environment emphasizing accountability, audacity, authenticity, curiosity, and engagement. Rooted in connection with colleagues and the communities served. - **Work Model**: Hybrid-remote with headquarters in Cambridge, MA. Three annual Anchor Weeks in-person and bi-weekly Amylyx Exchange meetings for connection. - **Benefits**: Flexible PTO, 5% 401(k) employer contribution, paid parental leave, medical/dental/vision, HSA/FSA, employee assistance program, mobile reimbursement, learning and development program, recognition platform. - **Engineering/Research Culture**: Emphasis on rigorous science, continuous learning, and generous knowledge sharing. Opportunities to work on cutting-edge therapies from preclinical through commercialization. ## Sources 1. [Amylyx Pharmaceuticals - Our Company](https://www.amylyx.com/our-company) 2. [Amylyx Pharmaceuticals - Careers](https://www.amylyx.com/careers) 3. [Amylyx Pharmaceuticals - Homepage](https://www.amylyx.com/) 4. [Jobs at Amylyx Pharmaceuticals - Greenhouse](https://job-boards.greenhouse.io/amylyx) 5. 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